Here are some scrapped ideas I came up with. I would implement them if I had more free time. Maybe these could return in the future.
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MTF Alpha-1 “Red Right Hand” would replace any Epsilon 11 spawns if there is currently someone with the O5 Councilmember subclass alive. Their main objective is to rescue the O5 member and recontain any anomalies, same as regular MTF. The difference is they spawn with more OP weaponry (MTF Privates and MTF Sergeants would both be replaced by a baseline squad member with an E11 and other things, and the Captain is a squad leader)
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MTF Tau-5 “Samsaura” is what an O5 Scientist becomes upon escaping while not detained. It also immediately spawns up to 3 random spectators in alongside them to form a 4-person squad. All 4 people each spawn with a unique subclass modeled off each character from the lore: Irantu, Nanku, Munru, and Onru. Each person has unique (possibly overpowered) abilities that drastically changes each’s playstyle.