I didn't use the pushers on the side of the extrusion mount. A small hammer with an indicator on the side worked well, but I can see having jack screws to control movement would be nice.
I did not have any problems with repeatability other than when the indicator sweeps along the 90° rail, the elevation changes due to play in the lower carriage. For this I have added a 2080 extrusion with 2 rails on the bottom.
I did have some issues with the 90° being 90°. I used 123 blocks and I should have trammed the square tubing to the lower 2040 then assemble.
Since it was on the machine already, I trammed the fixed rail assembly to the frame extrusion. Then trammed the framed rail to the tools extrusion. From there I trammed the 90° rail against the frame extrusion and it was within .001"
The problem I had was the rail risers were not parallel to the frame extrusion. I guess 14 beers in I got sloppy with the drilling.
It does not really matter where your master rail is or if you choose to have the frame be the master, just be sure you adjust the frame rail to the frame extrusion if the frame is the master. All that matters is that the gantry rails are 90 to one another and you have some freedom to tweak the rail position.
*** rail bolt slop only gives about .010" of movement! If your initial setup is not close they will not align (Keep in mind I am using bolts threaded into solid aluminum and not T-Nuts as those will give more adjusting freedom).
I found that is is of utmost importance to get that 90° tube 90°. This way the assembly can be trammed to one of the frame rails and the 90° frame rails will be moved to match the 90° rail on the device.
Another thing is that this could use 2 indicators mounted vs 1, to save time. Not a big deal, it just might take 9 beers instead of 6.
Working on making better pushers before final release.