Hello to anyone who stumbles upon this help, the key aspects of the 3d printer itself
-BMG bowden drive
-ED3 v6 "volcano hotend"
-SKR 1.4 motherboard
-TMC 2209s
The problem lies withing the extrusion, wich at any given moment, it is heavily obstructed with no aparent reason, since the nozzle has been multiple times cleaned up, and the e-steps seems fine (althought 40 stp/mm seems odd, it seems to be correct/exact)