There's a savegame and a recording attached.
The issue reproduces for me when I load that savegame 100% even after game restart. The trains coming from the north are jumping into the vortex in a slow-motion for no apparent reason.
Even if I wait when there are no trains from other directions for several seconds, these trains are slow.
Issue has occured multiple times but resolved eventually. I think once the queue drain, the new trains will jump in normally until the clogging happens again.