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It's great that you took the initiative to calibrate your printer, but it sounds like the Z-Offset was set too low this time, resulting in the deep scratch on your print bed. As for potential damage to other components, it's good that you conducted test prints and they seem fine.
In general, a deep scratch on the print bed should not directly affect the nozzle, axis, or extruder components as long as everything else seems to be functioning properly. However, it's always a good idea to visually inspect these components for any signs of damage or wear.
If your printer is functioning normally and producing successful prints after the incident, it's likely that no major damage occurred. If you notice any unusual behavior or issues during printing, you may want to have a more thorough check of the printer to ensure everything is in working order.