Just started playing this game again since 2.0 came out, and I'm seeing what looks like a bug with very basic inserter logic when a machine's output is full. Sometimes the inserters feeding my furnaces won't keep the furnace's internal input buffer full when the furnace's output is full. The inserter's error message is "Waiting for source items", even though it's source belt is completely full. The furnace's error message is of course "No ingredients". The problem fixes itself as soon as the output inserter takes an item from the furnace, bringing the output buffer back down to 99, at which point the input inserter starts immediately filling up the furnace again. So not a game-breaking bug by any means, but it results in less than 100% efficiency, which prevents me from sleeping soundly at night.
I also tried replacing the burner inserter with an electric inserter, but it didn't has the same problem.